DNA sequence analysis software "CodonCode Aligner"
DNA sequence assembly and alignment
This is a program for Windows and macOS that helps with DNA barcoding, sequence assembly, contig editing, and mutation detection. It features a user-friendly and easy-to-understand interface, while also fully supporting quality scores for sequences compatible with Phred-Phrap.
basic information
CodonCode Aligner Features List 〇 Import/Export ・Import of sequence chromatograms in ABI, AB1, SCF formats ・Import of text files in FASTA, FASTQ, Sam, GenBank, EMBL formats ・Import of subsets of samples (e.g., every nth sample, samples matching selected sequences within a project, etc.) 〇 Sequence Editing and Trimming ・Manual editing of sequences and contigs: deletion of samples or contig ends, splitting contigs, etc. 〇 Sequence Assembly 〇 Sequence Alignment 〇 Sequence Translation 〇 Virtual Cloning 〇 Restriction Mapping 〇 RFLP Analysis 〇 Primer Design 〇 Phylogenetic Tree 〇 Mutation Detection and Analysis 〇 Differential Table 〇 Customization 〇 Methylation Analysis
Price range
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Applications/Examples of results
Example of a paper using CodonCode Aligner in the analysis process of the novel coronavirus: - Emergence of two distinct variants of SARS-CoV-2 and an explosive second wave of COVID-19: the experience of a tertiary care hospital in Pune, India / 9 Jan, 2022, / By Shubham Shrivastava et al. / Archives of Virology For more details, please refer to the link below. https://www.hulinks.co.jp/software/chem/aligner/section04
